fix markdown parser (#230)

api/core/index/readers/markdown_parser.py

+"""Markdown parser.
+
+Contains parser for md files.
+
+"""
+import re
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Tuple, Union, cast
+
+from llama_index.readers.file.base_parser import BaseParser
+
+
+class MarkdownParser(BaseParser):
+    """Markdown parser.
+
+    Extract text from markdown files.
+    Returns dictionary with keys as headers and values as the text between headers.
+
+    """
+
+    def __init__(
+        self,
+        *args: Any,
+        remove_hyperlinks: bool = True,
+        remove_images: bool = True,
+        **kwargs: Any,
+    ) -> None:
+        """Init params."""
+        super().__init__(*args, **kwargs)
+        self._remove_hyperlinks = remove_hyperlinks
+        self._remove_images = remove_images
+
+    def markdown_to_tups(self, markdown_text: str) -> List[Tuple[Optional[str], str]]:
+        """Convert a markdown file to a dictionary.
+
+        The keys are the headers and the values are the text under each header.
+
+        """
+        markdown_tups: List[Tuple[Optional[str], str]] = []
+        lines = markdown_text.split("\n")
+
+        current_header = None
+        current_text = ""
+
+        for line in lines:
+            header_match = re.match(r"^#+\s", line)
+            if header_match:
+                if current_header is not None:
+                    markdown_tups.append((current_header, current_text))
+
+                current_header = line
+                current_text = ""
+            else:
+                current_text += line + "\n"
+        markdown_tups.append((current_header, current_text))
+
+        if current_header is not None:
+            # pass linting, assert keys are defined
+            markdown_tups = [
+                (re.sub(r"#", "", cast(str, key)).strip(), re.sub(r"<.*?>", "", value))
+                for key, value in markdown_tups
+            ]
+        else:
+            markdown_tups = [
+                (key, re.sub("\n", "", value)) for key, value in markdown_tups
+            ]
+
+        return markdown_tups
+
+    def remove_images(self, content: str) -> str:
+        """Get a dictionary of a markdown file from its path."""
+        pattern = r"!{1}\[\[(.*)\]\]"
+        content = re.sub(pattern, "", content)
+        return content
+
+    def remove_hyperlinks(self, content: str) -> str:
+        """Get a dictionary of a markdown file from its path."""
+        pattern = r"\[(.*?)\]\((.*?)\)"
+        content = re.sub(pattern, r"\1", content)
+        return content
+
+    def _init_parser(self) -> Dict:
+        """Initialize the parser with the config."""
+        return {}
+
+    def parse_tups(
+        self, filepath: Path, errors: str = "ignore"
+    ) -> List[Tuple[Optional[str], str]]:
+        """Parse file into tuples."""
+        with open(filepath, "r", encoding="utf-8") as f:
+            content = f.read()
+        if self._remove_hyperlinks:
+            content = self.remove_hyperlinks(content)
+        if self._remove_images:
+            content = self.remove_images(content)
+        markdown_tups = self.markdown_to_tups(content)
+        return markdown_tups
+
+    def parse_file(
+        self, filepath: Path, errors: str = "ignore"
+    ) -> Union[str, List[str]]:
+        """Parse file into string."""
+        tups = self.parse_tups(filepath, errors=errors)
+        results = []
+        # TODO: don't include headers right now
+        for header, value in tups:
+            if header is None:
+                results.append(value)
+            else:
+                results.append(f"\n\n{header}\n{value}")
+        return results

api/core/indexing_runner.py

@@ -12,11 +12,10 @@ from llama_index.data_structs import Node
 from llama_index.data_structs.node_v2 import DocumentRelationship
 from llama_index.node_parser import SimpleNodeParser, NodeParser
 from llama_index.readers.file.base import DEFAULT_FILE_EXTRACTOR
-from llama_index.readers.file.markdown_parser import MarkdownParser
-
 from core.docstore.dataset_docstore import DatesetDocumentStore
 from core.index.keyword_table_index import KeywordTableIndex
 from core.index.readers.html_parser import HTMLParser
+from core.index.readers.markdown_parser import MarkdownParser
 from core.index.readers.pdf_parser import PDFParser
 from core.index.spiltter.fixed_text_splitter import FixedRecursiveCharacterTextSplitter
 from core.index.vector_index import VectorIndex
@@ -247,6 +246,7 @@ class IndexingRunner:
 
             file_extractor = DEFAULT_FILE_EXTRACTOR.copy()
             file_extractor[".markdown"] = MarkdownParser()
+            file_extractor[".md"] = MarkdownParser()
             file_extractor[".html"] = HTMLParser()
             file_extractor[".htm"] = HTMLParser()
             file_extractor[".pdf"] = PDFParser({'upload_file': upload_file})